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Registro Completo |
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Biblioteca(s): |
Embrapa Meio Ambiente. |
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Data corrente: |
21/12/2012 |
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Data da última atualização: |
21/12/2012 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ANDREOTE, F. D.; JIMENEZ, D. J.; CHAVES, D.; DIAS, A. C. F.; LUVIZOTTO, D. M.; DINI-ANDREOTE, F.; FASANELLA, C. C.; VARON LOPEZ, M.; BAENA, S.; TAKETANI, R. G.; MELO, I. S. de. |
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Afiliação: |
FERNANDO DINI ANDREOTE, ESALQ-USP; DIEGO JAVIER JIMENEZ, Pontificia UNiversidad Javeriana; DIEOGO CHAVES, Colombian Center for Genomic and Bioinformatics from Extreme Environments; ARMANDO CAVALCANTE FRANCO DIAS, ESALQ-USP; DANICE MAZZER LUVIZOTTO, ESALQ-USP; FRANCISCO DINI-ANDREOTE, ESALQ-USP; CRISTIANE CIPOLA FASANELLA, ESALQ-USP; MARYEIMY VARON LOPEZ, ESALQ-USP; SANDRA BAENA, Pontificia Universidad Javeriana; RODRIGO GOUVÊA TAKETANI; ITAMAR SOARES DE MELO, CNPMA. |
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Título: |
The microbiome of brazilian mangrove sediments as revealed by metagenomics. |
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Ano de publicação: |
2012 |
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Fonte/Imprenta: |
Plos One, v. 7, n. 6, 14 p., 2012. |
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Idioma: |
Inglês |
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Conteúdo: |
ABSTRACT: Here we embark in a deep metagenomic survey that revealed the taxonomic and potential metabolic pathways aspects of mangrove sediment microbiology. The extraction of DNA from sediment samples and the direct application of pyrosequencing resulted in approximately 215 Mb of data from four distinct mangrove areas (BrMgv01 to 04) in Brazil. The taxonomic approaches applied revealed the dominance of Deltaproteobacteria and Gammaproteobacteria in the samples. Paired statistical analysis showed higher proportions of specific taxonomic groups in each dataset. The metabolic reconstruction indicated the possible occurrence of processes modulated by the prevailing conditions found in mangrove sediments. In terms of carbon cycling, the sequences indicated the prevalence of genes involved in the metabolism of methane, formaldehyde, and carbon dioxide. With respect to the nitrogen cycle, evidence for sequences associated with dissimilatory reduction of nitrate, nitrogen immobilization, and denitrification was detected. Sequences related to the production of adenylsulfate, sulfite, and H2S were relevant to the sulphur cycle. These data indicate that the microbial core involved in methane, nitrogen, and sulphur metabolism consists mainly of Burkholderiaceae, Planctomycetaceae, Rhodobacteraceae, and Desulfobacteraceae. Comparison of our data to datasets from soil and sea samples resulted in the allotment of the mangrove sediments between those samples. The results of this study add valuable data about the composition of microbial communities in mangroves and also shed light on possible transformations promoted by microbial organisms in mangrove sediments. MenosABSTRACT: Here we embark in a deep metagenomic survey that revealed the taxonomic and potential metabolic pathways aspects of mangrove sediment microbiology. The extraction of DNA from sediment samples and the direct application of pyrosequencing resulted in approximately 215 Mb of data from four distinct mangrove areas (BrMgv01 to 04) in Brazil. The taxonomic approaches applied revealed the dominance of Deltaproteobacteria and Gammaproteobacteria in the samples. Paired statistical analysis showed higher proportions of specific taxonomic groups in each dataset. The metabolic reconstruction indicated the possible occurrence of processes modulated by the prevailing conditions found in mangrove sediments. In terms of carbon cycling, the sequences indicated the prevalence of genes involved in the metabolism of methane, formaldehyde, and carbon dioxide. With respect to the nitrogen cycle, evidence for sequences associated with dissimilatory reduction of nitrate, nitrogen immobilization, and denitrification was detected. Sequences related to the production of adenylsulfate, sulfite, and H2S were relevant to the sulphur cycle. These data indicate that the microbial core involved in methane, nitrogen, and sulphur metabolism consists mainly of Burkholderiaceae, Planctomycetaceae, Rhodobacteraceae, and Desulfobacteraceae. Comparison of our data to datasets from soil and sea samples resulted in the allotment of the mangrove sediments between those samples. The results of this study add... Mostrar Tudo |
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Palavras-Chave: |
Metagenômica. |
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Thesagro: |
Bactéria; Mangue; Sedimento. |
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Thesaurus Nal: |
Delta-Proteobacteria; Gamma-Proteobacteria; Mangrove forests; Metagenomics; Sediments. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/72747/1/2012AP59.pdf
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Marc: |
LEADER 02611naa a2200349 a 4500
001 1943451
005 2012-12-21
008 2012 bl uuuu u00u1 u #d
100 1 $aANDREOTE, F. D.
245 $aThe microbiome of brazilian mangrove sediments as revealed by metagenomics.$h[electronic resource]
260 $c2012
520 $aABSTRACT: Here we embark in a deep metagenomic survey that revealed the taxonomic and potential metabolic pathways aspects of mangrove sediment microbiology. The extraction of DNA from sediment samples and the direct application of pyrosequencing resulted in approximately 215 Mb of data from four distinct mangrove areas (BrMgv01 to 04) in Brazil. The taxonomic approaches applied revealed the dominance of Deltaproteobacteria and Gammaproteobacteria in the samples. Paired statistical analysis showed higher proportions of specific taxonomic groups in each dataset. The metabolic reconstruction indicated the possible occurrence of processes modulated by the prevailing conditions found in mangrove sediments. In terms of carbon cycling, the sequences indicated the prevalence of genes involved in the metabolism of methane, formaldehyde, and carbon dioxide. With respect to the nitrogen cycle, evidence for sequences associated with dissimilatory reduction of nitrate, nitrogen immobilization, and denitrification was detected. Sequences related to the production of adenylsulfate, sulfite, and H2S were relevant to the sulphur cycle. These data indicate that the microbial core involved in methane, nitrogen, and sulphur metabolism consists mainly of Burkholderiaceae, Planctomycetaceae, Rhodobacteraceae, and Desulfobacteraceae. Comparison of our data to datasets from soil and sea samples resulted in the allotment of the mangrove sediments between those samples. The results of this study add valuable data about the composition of microbial communities in mangroves and also shed light on possible transformations promoted by microbial organisms in mangrove sediments.
650 $aDelta-Proteobacteria
650 $aGamma-Proteobacteria
650 $aMangrove forests
650 $aMetagenomics
650 $aSediments
650 $aBactéria
650 $aMangue
650 $aSedimento
653 $aMetagenômica
700 1 $aJIMENEZ, D. J.
700 1 $aCHAVES, D.
700 1 $aDIAS, A. C. F.
700 1 $aLUVIZOTTO, D. M.
700 1 $aDINI-ANDREOTE, F.
700 1 $aFASANELLA, C. C.
700 1 $aVARON LOPEZ, M.
700 1 $aBAENA, S.
700 1 $aTAKETANI, R. G.
700 1 $aMELO, I. S. de
773 $tPlos One$gv. 7, n. 6, 14 p., 2012.
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Registro original: |
Embrapa Meio Ambiente (CNPMA) |
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Biblioteca(s): |
Embrapa Roraima. |
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Data corrente: |
30/11/2018 |
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Data da última atualização: |
06/12/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
GOMES, V. H. F.; IJFF, S. D.; RAES, N.; AMARAL, I. L.; SALOMÃO, R. P; COELHO, L. D. S.; MATOS, F. D. D. A.; CASTILHO, C. V.; LIMA FILHO, D. DE A.; LÓPEZ, D. C; GUEVARA, J. E.; MAGNUSSON, W. E; PHILLIPS, O. L.; WITTMANN, F.; CARIM, M. D. J. V.; MARTINS, M. P.; IRUME, M. V.; SABATIER, D.; MOLINO, J. F; BÁNKI, O. S.; GUIMARÃES, J. R. D. S.; PITMAN, N. C. A.; PIEDADE, M. T. F.; MENDOZA, A. M.; LUIZE, B. G.; VENTICINQUE, E. M.; NOVO, E. M. M. D. L.; VARGAS, P. N.; SILVA, T. S. F.; MANZATTO, A. G.; TERBORGH, J.; REIS, N. F. C.; MONTERO, J. C.; CASULA, K. R.; MARIMON, B. S.; MARIMON, B. H.; CORONADO, E. N. H.; FELDPAUSCH, T. R.; DUQUE, A.; ZARTMAN, C. E.; ARBOLEDA, N. C.; KILLEEN, T. J.; MOSTACEDO, B.; VASQUEZ, R.; SCHÖNGART, J.; ASSIS, R. L.; MEDEIROS, M. B.; SIMON, M. F.; ANDRADE, A.; LAURANCE, W. F.; CAMARGO, J. L.; DEMARCHI, L. O.; LAURANCE, S. G. W.; FARIAS, E. D. S.; NASCIMENTO, H. E. M.; REVILLA, J. D. C.; QUARESMA, A.; COSTA, F. R. C.; VIEIRA, I. C. G.; CINTRA, B. B. L.; CASTELLANOS, H.; BRIENEN, R.; STEVENSON, P. R.; FEITOSA, Y.; DUIVENVOORDEN, J. F.; AYMARD, G. A. C.; MOGOLLÓN, H. F.; TARGHETTA, N.; COMISKEY, J. A.; VICENTINI, A.; LOPES, A.; DAMASCO, G.; DÁVILA, N.; GARCÍA-VILLACORTA, R.; LEVIS, C.; SCHIETTI, J.; SOUZA, P.; EMILIO, T.; ALONSO, A.; NEILL, D.; DALLMEIER, F.; FERREIRA, L. V.; ARAUJO-MURAKAMI, A.; PRAIA, D.; AMARAL, D. D. do; CARVALHO, F. A.; SOUZA, F. C. de; FEELEY, K.; ARROYO, L.; PANSONATO, M. P.; GRIBEL, R.; VILLA, B.; LICONA, J. C.; FINE, P. V. A.; CERÓN, C.; BARALOTO, C.; JIMENEZ, E. M.; STROPP, J.; ENGEL, J.; SILVEIRA, M.; MORA, M. C. P.; PETRONELLI, P.; MAAS, P.; THOMAS-CAESAR, R.; HENKEL, T. W.; DALY, D.; PAREDES, M. R.; BAKER, T. R.; FUENTES, A.; PERES, C. A.; CHAVE, J.; PENA, J. L. M.; DEXTER, K. G.; SILMAN, M. R.; JØRGENSEN, P. MØ.; PENNINGTON, T.; DI FIORE, A.; VALVERDE, F. C.; PHILLIPS, J. F.; RIVAS-TORRES, G.; VON HILDEBRAND, P.; VAN ANDEL, T. R.; RUSCHEL, A. R.; PRIETO, A.; RUDAS, A.; HOFFMAN, B.; VELA, C. I. A.; BARBOSA, E. M.; ZENT, E. L.; GONZALES, G. P. G.; DOZA, H. P. D.; MIRANDA, I. P. D. A.; GUILLAUMET, J. L.; PINTO, L. F. M.; BONATES, L. C. D. M.; SILVA, N.; GÓMEZ, R. Z.; ZENT, S.; GONZALES, T.; VOS, V. A.; MALHI, Y.; OLIVEIRA, A. A.; CANO, A.; ALBUQUERQUE, B. W.; VRIESENDORP, C.; CORREA, D. F.; TORRE, E. V.; VAN DER HEIJDEN, G.; RAMIREZ-ANGULO, H.; RAMOS, J. F.; YOUNG, K. R.; ROCHA, M.; NASCIMENTO, M. T.; MEDINA, M. N. U.; TIRADO, M.; WANG, O.; SIERRA, R.; TORRES-LEZAMA, A.; MENDOZA, C.; FERREIRA, C.; BAIDER, C.; VILLARROEL, D.; BALSLEV, H.; MESONES, I.; GIRALDO, L. E. U.; CASAS, L. F.; REATEGUI, M. A. A.; LINARES-PALOMINO, R.; ZAGT, R.; CÁRDENAS, S.; FARFAN-RIOS, W.; SAMPAIO, A. F.; PAULETTO, D.; SANDOVAL, E. H. V.; AREVALO, F. R.; HUAMANTUPA-CHUQUIMACO, I.; GARCIA-CABRERA, K.; HERNANDEZ, L.; GAMARRA, L. V.; ALEXIADES, M. N.; PANSINI, S.; CUENCA, W. P.; MILLIKEN, W.; RICARDO, J.; LOPEZ-GONZALEZ, G.; POS, E.; TER STEEGE, H. |
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Afiliação: |
CAROLINA VOLKMER DE CASTILHO, CPAF-Roraima; MARCELO BRILHANTE DE MEDEIROS, Cenargen; MARCELO FRAGOMENI SIMON, Cenargen. |
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Título: |
Species distribution modelling: contrasting presence-only models with plot abundance data. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Scientific Reports, v. 8, n. 1, 2018. |
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DOI: |
10.1038/s41598-017-18927-1 |
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Idioma: |
Inglês |
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Palavras-Chave: |
Amazonian tree; SDMs; Species distribution models. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 06207naa a2202389 a 4500
001 2100469
005 2018-12-06
008 2018 bl --- 0-- u #d
024 7 $a10.1038/s41598-017-18927-1$2DOI
100 1 $aGOMES, V. H. F.
245 $aSpecies distribution modelling$bcontrasting presence-only models with plot abundance data.$h[electronic resource]
260 $c2018
653 $aAmazonian tree
653 $aSDMs
653 $aSpecies distribution models
700 1 $aIJFF, S. D.
700 1 $aRAES, N.
700 1 $aAMARAL, I. L.
700 1 $aSALOMÃO, R. P
700 1 $aCOELHO, L. D. S.
700 1 $aMATOS, F. D. D. A.
700 1 $aCASTILHO, C. V.
700 1 $aLIMA FILHO, D. DE A.
700 1 $aLÓPEZ, D. C
700 1 $aGUEVARA, J. E.
700 1 $aMAGNUSSON, W. E
700 1 $aPHILLIPS, O. L.
700 1 $aWITTMANN, F.
700 1 $aCARIM, M. D. J. V.
700 1 $aMARTINS, M. P.
700 1 $aIRUME, M. V.
700 1 $aSABATIER, D.
700 1 $aMOLINO, J. F
700 1 $aBÁNKI, O. S.
700 1 $aGUIMARÃES, J. R. D. S.
700 1 $aPITMAN, N. C. A.
700 1 $aPIEDADE, M. T. F.
700 1 $aMENDOZA, A. M.
700 1 $aLUIZE, B. G.
700 1 $aVENTICINQUE, E. M.
700 1 $aNOVO, E. M. M. D. L.
700 1 $aVARGAS, P. N.
700 1 $aSILVA, T. S. F.
700 1 $aMANZATTO, A. G.
700 1 $aTERBORGH, J.
700 1 $aREIS, N. F. C.
700 1 $aMONTERO, J. C.
700 1 $aCASULA, K. R.
700 1 $aMARIMON, B. S.
700 1 $aMARIMON, B. H.
700 1 $aCORONADO, E. N. H.
700 1 $aFELDPAUSCH, T. R.
700 1 $aDUQUE, A.
700 1 $aZARTMAN, C. E.
700 1 $aARBOLEDA, N. C.
700 1 $aKILLEEN, T. J.
700 1 $aMOSTACEDO, B.
700 1 $aVASQUEZ, R.
700 1 $aSCHÖNGART, J.
700 1 $aASSIS, R. L.
700 1 $aMEDEIROS, M. B.
700 1 $aSIMON, M. F.
700 1 $aANDRADE, A.
700 1 $aLAURANCE, W. F.
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700 1 $aDUIVENVOORDEN, J. F.
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700 1 $aTARGHETTA, N.
700 1 $aCOMISKEY, J. A.
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700 1 $aLOPES, A.
700 1 $aDAMASCO, G.
700 1 $aDÁVILA, N.
700 1 $aGARCÍA-VILLACORTA, R.
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700 1 $aSCHIETTI, J.
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700 1 $aEMILIO, T.
700 1 $aALONSO, A.
700 1 $aNEILL, D.
700 1 $aDALLMEIER, F.
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700 1 $aARAUJO-MURAKAMI, A.
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700 1 $aVILLA, B.
700 1 $aLICONA, J. C.
700 1 $aFINE, P. V. A.
700 1 $aCERÓN, C.
700 1 $aBARALOTO, C.
700 1 $aJIMENEZ, E. M.
700 1 $aSTROPP, J.
700 1 $aENGEL, J.
700 1 $aSILVEIRA, M.
700 1 $aMORA, M. C. P.
700 1 $aPETRONELLI, P.
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700 1 $aPERES, C. A.
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700 1 $aVAN ANDEL, T. R.
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700 1 $aMALHI, Y.
700 1 $aOLIVEIRA, A. A.
700 1 $aCANO, A.
700 1 $aALBUQUERQUE, B. W.
700 1 $aVRIESENDORP, C.
700 1 $aCORREA, D. F.
700 1 $aTORRE, E. V.
700 1 $aVAN DER HEIJDEN, G.
700 1 $aRAMIREZ-ANGULO, H.
700 1 $aRAMOS, J. F.
700 1 $aYOUNG, K. R.
700 1 $aROCHA, M.
700 1 $aNASCIMENTO, M. T.
700 1 $aMEDINA, M. N. U.
700 1 $aTIRADO, M.
700 1 $aWANG, O.
700 1 $aSIERRA, R.
700 1 $aTORRES-LEZAMA, A.
700 1 $aMENDOZA, C.
700 1 $aFERREIRA, C.
700 1 $aBAIDER, C.
700 1 $aVILLARROEL, D.
700 1 $aBALSLEV, H.
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700 1 $aHUAMANTUPA-CHUQUIMACO, I.
700 1 $aGARCIA-CABRERA, K.
700 1 $aHERNANDEZ, L.
700 1 $aGAMARRA, L. V.
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700 1 $aPANSINI, S.
700 1 $aCUENCA, W. P.
700 1 $aMILLIKEN, W.
700 1 $aRICARDO, J.
700 1 $aLOPEZ-GONZALEZ, G.
700 1 $aPOS, E.
700 1 $aTER STEEGE, H.
773 $tScientific Reports$gv. 8, n. 1, 2018.
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